Rabies virus related to vampire bats (Desmodus rotundus) isolated from a crab-eating fox (Cerdocyon thous) in Southeast Brazil

In this study, rabies virus was isolated from a naturally infected crab-eating fox [Cerdocyon thous] in a rural area of São Paulo State, Brazil. The sample was positive for the standard techniques used for rabies diagnosis. The isolate was antigenically characterized using anti-nucleoprotein monoclonal antibodies. Studies on molecular epidemiology by patterns of nucleotide substitution in the nucleoprotein gene showed that the isolate was genetically homologous to the rabies variant maintained and transmitted by the common vampire bat Desmodus rotundus. This is the first report of detection of this variant from a crab-eating fox in Brazil and represents evidence of cross-species transmission. This was the unique report where this variant was isolated from a crab eating fox in Brazil.

A high diversity of Eurasian lineage low pathogenicity avian influenza A viruses circulate among wild birds sampled in Egypt.

Surveillance for influenza A viruses in wild birds has increased substantially as part of efforts to control the global movement of highly pathogenic avian influenza A (H5N1) virus. Studies conducted in Egypt from 2003 to 2007 to monitor birds for H5N1 identified multiple subtypes of low pathogenicity avian influenza A viruses isolated primarily from migratory waterfowl collected in the Nile Delta. Phylogenetic analysis of 28 viral genomes was performed to estimate their nearest ancestors and identify possible reassortants. Migratory flyway patterns were included in the analysis to assess gene flow between overlapping flyways. Overall, the viruses were most closely related to Eurasian, African and/or Central Asian lineage low pathogenicity viruses and belonged to 15 different subtypes. A subset of the internal genes seemed to originate from specific flyways (Black Sea-Mediterranean, East African-West Asian). The remaining genes were derived from a mixture of viruses broadly distributed across as many as 4 different flyways suggesting the importance of the Nile Delta for virus dispersal. Molecular clock date estimates suggested that the time to the nearest common ancestor of all viruses analyzed ranged from 5 to 10 years, indicating frequent genetic exchange with viruses sampled elsewhere. The intersection of multiple migratory bird flyways and the resulting diversity of influenza virus gene lineages in the Nile Delta create conditions favoring reassortment, as evident from the gene constellations identified by this study. In conclusion, we present for the first time a comprehensive phylogenetic analysis of full genome sequences from low pathogenic avian influenza viruses circulating in Egypt, underscoring the significance of the region for viral reassortment and the potential emergence of novel avian influenza A viruses, as well as representing a highly diverse influenza A virus gene pool that merits continued monitoring.

Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing.

We show that comprehensive sequence-function maps obtained by deep sequencing can be used to reprogram interaction specificity and to leapfrog over bottlenecks in affinity maturation by combining many individually small contributions not detectable in conventional approaches. We use this approach to optimize two computationally designed inhibitors against H1N1 influenza hemagglutinin and, in both cases, obtain variants with subnanomolar binding affinity. The most potent of these, a 51-residue protein, is broadly cross-reactive against all influenza group 1 hemagglutinins, including human H2, and neutralizes H1N1 viruses with a potency that rivals that of several human monoclonal antibodies, demonstrating that computational design followed by comprehensive energy landscape mapping can generate proteins with potential therapeutic utility.

Zoonotic transmission of avian influenza virus (H5N1), Egypt, 2006-2009.

During March 2006-March 2009, a total of 6,355 suspected cases of avian influenza (H5N1) were reported to the Ministry of Health in Egypt. Sixty-three (1%) patients had confirmed infections; 24 (38%) died. Risk factors for death included female sex, age > or = 15 years, and receiving the first dose of oseltamivir >2 days after illness onset. All but 2 case-patients reported exposure to domestic poultry probably infected with avian influenza virus (H5N1). No cases of human-to-human transmission were found. Greatest risks for infection and death were reported among women > or = 15 years of age, who accounted for 38% of infections and 83% of deaths. The lower case-fatality rate in Egypt could be caused by a less virulent virus clade. However, the lower mortality rate seems to be caused by the large number of infected children who were identified early, received prompt treatment, and had less severe clinical disease.

Rabies virus maintained by dogs in humans and terrestrial wildlife, Ceará State, Brazil.

Rabies viruses circulating in Ceará, Brazil, were identified by molecular analysis to be related to variants maintained by dogs, bats, and other wildlife. Most of these viruses are associated with human rabies cases. We document the emergence of a rabies virus variant responsible for an independent epidemic cycle in the crab-eating fox (Cerdocyon thous).

Antigenic and molecular characterization of rabies virus in Argentina.

The nucleoprotein genes of 54 human, domestic and wild animals rabies isolates obtained in Argentina between 1995 and 2002 were characterized using monoclonal antibodies and partial gene sequence analysis. The antigenic and genetic diversities of rabies virus in samples from bat and bat-related cases were studied, leading to the identification of five distinct genetic variants. Rabies viruses isolated from vampire bat related cases were very similar to each other, showing 98.9% overall similarity. Specific antigenic variants (AgV) were detected associated with different insectivorous bats species, in samples from Tadarida brasiliensis and Eumops patagonicus bats. In contrast, isolates from Myotis sp. and Histiotus sp. bats could not be matched to any antigenic type. Additionally, bat rabies cases were also detected in southern provinces previously considered rabies-free. Finally, two independent antigenic and genetic variants co-circulating in northern Argentina were found in isolates obtained from dogs and dog-related cases, suggesting two independent cycles of virus transmission. This is the first national coordinated study of antigenic as well as molecular epidemiology of rabies in Argentina. The information presented here will improve our knowledge about rabies epidemiology and therefore, will assist preventing fatal human cases.

Genetic divergence of rabies viruses from bat species of Colorado, USA.

Molecular epidemiological studies have linked many cryptic human rabies cases in the United States with exposure to rabies virus (RV) variants associated with insectivorous bats. In Colorado, bats accounted for 98% of all reported animal rabies cases between 1977 and 1996. The genetic divergence of RV was investigated in bat and terrestrial animal specimens that were submitted for rabies diagnosis to the Colorado Department of Public Health and Environment (CDPHE), Colorado, USA. RV isolates from animal specimens across the United States were also included in the analysis. Phylogenetic analyses were performed on partial nucleoprotein (N) gene sequences, which revealed seven principal clades. RV associated with the colonial big brown bat, Eptesicus fuscus, an bats of the genus Myotis were found to segregate into two distinct clades (I and IV). Clade I was harbored by E. fuscus and Myotis species, but was also identified in terrestrial animals such as domestic cats and striped skunks (Mephitis mephitis). Clade IV was divided into subclades IVA, IVB, and IVC; IVA was identified in E. fuscus, and Myotis species bats, and also in a fox; subclades IVB and IVC circulated predominantly in E. fuscus. Clade II was formed by big free-tailed bat (Nyctinomops macrotis) and striped skunk (Mephitis mephitis) samples. Clade III included RVs that are maintained by generally solitary, migratory bats such as the silver-haired bat (Lasionycteris noctivagans) and bats of the genus Lasiurus. Big brown bats were found to harbor this RV variant. None of the Colorado specimens segregated with clades V and VII that harbor RVs associated with terrestrial animals. Different species of bats had the same RV variant, indicating active inter-species rabies transmission. In Colorado, animal rabies occurs principally in bats, and the identification of bat RVs in cat, gray fox Urocyon cinereoargenteus), and striped skunks demonstrated the importance of rabies spillover from bats to domestic and terrestrial wildlife species.

First case of human rabies in chile caused by an insectivorous bat virus variant.

The first human rabies case in Chile since 1972 occurred in March 1996 in a patient without history of known exposure. Antigenic and genetic characterization of the rabies isolate indicated that its reservoir was the insectivorous bat Tadarida brasiliensis. This is the first human rabies case caused by an insectivorous bat rabies virus variant reported in Latin America.

Aislamiento y caracterización molecular de un virus rábico, obtenido de un murciélago no hematófago en la ciudad de México / Isolation and molecular characterization of rabies virus from a non-hematophagous bat in Mexico City

El objetivo de este estudio fue caracterizar antigénica y genéticamente un aislamiento del virus de la rabia obtenido de un murciélago insectívoro (Tadarida brasiliensis) encontrado en la ciudad de México en 1995. Al momento de la captura, el animal presentaba incoordinación de miembros, pelo hirsuto y debilidad general. El murciélago fue positivo a la prueba de inmunofluorescencia directa para el diagnóstico de rabia. Para la caracterización antigénica se efectuó un panel de ocho anticuerpos monoclonales dirigidos contra la nucleocápside viral, mediante la técnica de inmunofluorescencia indirecta. Como testigo se usó una muestra positiva a rabia proveniente de un bovino agredido por un murciélago vampiro (Desmodus rotundus). La tipificación genética se realizó a través del secuenciado de una posición del ADN complementario de la nucleoproteína viral, comprendida entre las posiciones 1094 y 1413. Para los estudios genéticos comparativos se aplicaron los programas PilUp y Distances Programa Genetic Computer Group (GCG) versión 8.1. La caracterización antigénica determinó que el virus aislado del Tadarida brasiliensis pertenecía a la variante antigénica 9 y el testigo a la variante 3. Esta última se encuentra distribuida en toda América Latina y su reservorio es el Desmodus rotundus. La caracterización genética demostró que la muestra problema compartía un porcentaje de homología del 91.7 por ciento con el testigo, pero siendo altamente homóloga (99.7 por ciento) a aislamientos obtenidos de Tadarida brasiliensis en Estados Unidos de América. Esto último sugiere la posible presencia de ciclos endémicos del virus de la rabia en las poblaciones de estos murciélagos en México. La alta diversidad y densidad de murciélagos en el país, así como los resultados obtenidos en este estudio, enfatizan la necesidad de efectuar investigaciones más detalladas acerca del papel que juegan los murciélagos no hematófagos en la epidemiología de la rabia en México.